![]() ![]() Without specifying the start and end, use '0 9999 42'. ']]' lets you optionally specify three numbers for useĪs start, end and offset, respectively. '#' requires an integer in the range from 0 to 9999.Ģ. aromatic 0.6 - sets aromatic bond distanceġ. destab 0.6 - sets destabilizing bond distance except # - adds an exclusion range (max 3) right A-Z ]] - sets chain 2, range and offset left A-Z ]] - sets chain 1, range and offset nodefault - ignores default bond distances align-right - choose right alignment file abbrev - shows the expansion of an abbreviation Listed below wins in the case of an abbreviation ambiguity. Options are parsed in linear order, so the first option If an option is specified twice, the latter generally overrides.Ībbreviations may be used for the option names however, clresmap.exe -pdb my.pdb -l A 50 70 -r B 90 110 The following is the syntax help from clresmap version 1.31.0: Syntax: clresmap Į.g. Thus, if you were to accidentally put quotes around "A 12 34", clresmap would abort with an error because it would see only argument with spaces instead of three separate arguments as it expects. ![]() Reminder about quotes: The use of quotes forces everything between the quotes to be passed to a program as a single argument. All of the programs share an identical back end library thus given identical data files and version numbers, clresmap will produce the exact same results as Resmap.Īssumptions: This guide assumes the user is familiar with the command line operating environment, which includes basic tasks such as argument passing and IO redirection.Įxample: clresmap -pdb "my pdbs/1ot5.pdb" -left A 12 34 > out.ps What is clresmap?Ĭlresmap is command line version of Resmap that runs on Windows, Macintosh OS X, and x86 Linux. It exports contact diagrams indicating which protein residues make noncovalent interactions across a macromolecuar interface. Resmap is a program designed to help researchers perform network analysis on protein structure files. ![]()
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